TFM-Explorer
TFM-Explorer
web server
help
examples
download
Enter regulatory sequences [
?
]
Enter the sequences name (optional)
Available organisms:
rat
(rn4)
mouse
(mm9)
human
(hg19)
chicken
(galGal3)
d.melanogaster
(dm3)
Enter a list of RefSeq identifiers (NM_*)
Paste your data
or upload a file
OR
Enter a set of sequences in FASTA format [
?
]
Paste your data
or upload a file
Location [
?
]
(boundaries of the sequences in regard of the TSS.
authorized values : -10000 to 5000)
Select transcription factor binding profiles [
?
]
Available weight matrices are public
TRANSFAC
(6.0) matrices and
JASPAR
2009 vertebrate matrices
Use public TRANSFAC matrices
only vertebrates
only insects
all TRANSFAC
Use all JASPAR vertebrate matrices
Use all available TRANSFAC and JASPAR matrices
Select weight matrices in the list below
B$CRP_C
F$ABAA_01
F$ABF_C
F$ABF1_01
F$ADR1_01
F$GAL4_01
F$GAL4_C
F$GCN4_01
F$GCN4_C
F$GCR1_01
F$HAP234_01
F$HSF_01
F$HSF_02
F$HSF_03
F$HSF_04
F$HSF_05
F$LAC9_C
F$MAT1MC_01
F$MAT1MC_02
F$MATA1_01
F$MATALPHA2_01
F$MCM1_01
F$MIG1_01
F$NIT2_01
F$PACC_01
F$PHO4_01
F$QA1F_01
F$RAP1_C
F$REPCAR1_01
F$STE11_01
F$STRE_01
F$STUAP_01
I$ABDB_01
I$ADF1_Q6
I$BCD_01
I$BRCZ1_01
I$BRCZ2_01
I$BRCZ3_01
I$BRCZ4_01
I$CF1_01
I$CF1_02
I$CF2II_01
I$CF2II_02
I$CROC_01
I$DFD_01
I$DL_01
I$DL_02
I$dTCF_1
I$E74A_01
I$ELF1_01
I$FTZ_01
I$GCM_01
I$HAIRY_01
I$HB_01
I$HSF_01
I$HSF_02
I$HSF_03
I$HSF_04
I$HSF_05
I$KR_01
I$SN_01
I$SN_02
I$STAT_01
I$SUH_01
I$TTK69_01
I$UBX_01
I$ZESTE_Q2
N$CES2_01
N$SKN1_01
N$SKN1_02
P$AG_01
P$AGL3_01
P$AGL3_02
P$ATHB1_01
P$ATHB9_01
P$BZIP910_01
P$BZIP910_02
P$BZIP911_01
P$BZIP911_02
P$CDC5_01
P$DOF1_01
P$DOF2_01
P$DOF3_01
P$GAMYB_01
P$GBP_Q6
P$MYBPH3_01
P$MYBPH3_02
P$O2_01
P$P_01
P$PBF_01
P$RAV1_01
P$RAV1_02
P$SBF1_01
V$AHR_01
V$AHRARNT_01
V$AHRARNT_02
V$AML1_01
V$AP1_C
V$AP1_Q2
V$AP1_Q4
V$AP1_Q6
V$AP1FJ_Q2
V$AP2_Q6
V$AP4_01
V$AP4_Q5
V$AP4_Q6
V$AREB6_01
V$AREB6_02
V$AREB6_03
V$AREB6_04
V$ARNT_01
V$ARP1_01
V$ATF_01
V$BARBIE_01
V$BRACH_01
V$BRN2_01
V$CAAT_01
V$CAAT_C
V$CAP_01
V$CART1_01
V$CDP_01
V$CDP_02
V$CDPCR1_01
V$CDPCR3_01
V$CDPCR3HD_01
V$CDXA_01
V$CDXA_02
V$CEBP_01
V$CEBP_C
V$CEBP_Q2
V$CEBPA_01
V$CEBPB_01
V$CEBPB_02
V$CETS1P54_01
V$CETS1P54_02
V$CHOP_01
V$CLOX_01
V$CMYB_01
V$COMP1_01
V$COUP_01
V$CP2_01
V$CREB_01
V$CREB_02
V$CREB_Q2
V$CREB_Q4
V$CREBP1_01
V$CREBP1_Q2
V$CREBP1CJUN_01
V$CREL_01
V$DELTAEF1_01
V$E2_01
V$E2_Q6
V$E2F_01
V$E2F_02
V$E47_01
V$E47_02
V$E4BP4_01
V$EGR1_01
V$EGR2_01
V$EGR3_01
V$ELK1_01
V$ELK1_02
V$EN1_01
V$ER_Q6
V$EVI1_01
V$EVI1_02
V$EVI1_03
V$EVI1_04
V$EVI1_05
V$EVI1_06
V$FOXD3_01
V$FOXJ2_01
V$FOXJ2_02
V$FREAC2_01
V$FREAC3_01
V$FREAC4_01
V$FREAC7_01
V$GATA_C
V$GATA1_01
V$GATA1_02
V$GATA1_03
V$GATA1_04
V$GATA1_05
V$GATA1_06
V$GATA2_01
V$GATA2_02
V$GATA2_03
V$GATA3_01
V$GATA3_02
V$GATA3_03
V$GC_01
V$GFI1_01
V$GKLF_01
V$GR_Q6
V$GRE_C
V$HAND1E47_01
V$HEN1_01
V$HEN1_02
V$HFH1_01
V$HFH3_01
V$HFH8_01
V$HLF_01
V$HNF1_01
V$HNF1_C
V$HNF3B_01
V$HNF4_01
V$HNF4_01_B
V$HOX13_01
V$HOXA3_01
V$HSF1_01
V$HSF2_01
V$IK1_01
V$IK2_01
V$IK3_01
V$IRF1_01
V$IRF2_01
V$ISRE_01
V$LMO2COM_01
V$LMO2COM_02
V$LYF1_01
V$MAX_01
V$MEF2_01
V$MEF2_02
V$MEF2_03
V$MEF2_04
V$MEIS1_01
V$MEIS1A/HOXA9_01
V$MEIS1B/HOXA9_01
V$MIF1_01
V$MSX1_01
V$MYB_Q6
V$MYCMAX_01
V$MYCMAX_02
V$MYOD_01
V$MYOD_Q6
V$MYOGNF1_01
V$MZF1_01
V$MZF1_02
V$NF1_Q6
V$NFAT_Q6
V$NFE2_01
V$NFKAPPAB_01
V$NFKAPPAB50_01
V$NFKAPPAB65_01
V$NFKB_C
V$NFKB_Q6
V$NFY_01
V$NFY_C
V$NFY_Q6
V$NGFIC_01
V$NKX25_01
V$NKX25_02
V$NKX61_01
V$NMYC_01
V$NRF2_01
V$NRSF_01
V$OCT_C
V$OCT1_01
V$OCT1_02
V$OCT1_03
V$OCT1_04
V$OCT1_05
V$OCT1_06
V$OCT1_07
V$OCT1_Q6
V$OLF1_01
V$P300_01
V$P53_01
V$P53_02
V$PADS_C
V$PAX2_01
V$PAX3_01
V$PAX4_01
V$PAX4_02
V$PAX4_03
V$PAX4_04
V$PAX5_01
V$PAX5_02
V$PAX6_01
V$PBX1_01
V$PBX1_02
V$POLY_C
V$PPARA_01
V$R_01
V$RFX1_01
V$RFX1_02
V$RORA1_01
V$RORA2_01
V$RREB1_01
V$RSRFC4_01
V$S8_01
V$SEF1_C
V$SOX5_01
V$SOX9_B1
V$SP1_01
V$SP1_Q6
V$SREBP1_01
V$SREBP1_02
V$SRF_01
V$SRF_C
V$SRF_Q6
V$SRY_01
V$SRY_02
V$STAF_01
V$STAF_02
V$STAT_01
V$STAT1_01
V$STAT3_01
V$T3R_01
V$TAL1ALPHAE47_01
V$TAL1BETAE47_01
V$TAL1BETAITF2_01
V$TATA_01
V$TATA_C
V$TAXCREB_01
V$TAXCREB_02
V$TCF11_01
V$TCF11MAFG_01
V$TGIF_01
V$TST1_01
V$USF_01
V$USF_02
V$USF_C
V$USF_Q6
V$VBP_01
V$VJUN_01
V$VMAF_01
V$VMYB_01
V$VMYB_02
V$XBP1_01
V$XFD1_01
V$XFD2_01
V$XFD3_01
V$YY1_01
V$YY1_02
V$ZID_01
MA0002.2
MA0003.1
MA0004.1
MA0006.1
MA0007.1
MA0009.1
MA0014.1
MA0017.1
MA0018.2
MA0019.1
MA0024.1
MA0025.1
MA0027.1
MA0028.1
MA0029.1
MA0030.1
MA0031.1
MA0032.1
MA0033.1
MA0035.2
MA0036.1
MA0037.1
MA0038.1
MA0039.2
MA0040.1
MA0041.1
MA0042.1
MA0043.1
MA0046.1
MA0047.2
MA0048.1
MA0050.1
MA0051.1
MA0052.1
MA0055.1
MA0056.1
MA0057.1
MA0058.1
MA0059.1
MA0060.1
MA0061.1
MA0062.2
MA0063.1
MA0065.2
MA0066.1
MA0067.1
MA0068.1
MA0069.1
MA0070.1
MA0071.1
MA0072.1
MA0073.1
MA0074.1
MA0075.1
MA0076.1
MA0077.1
MA0078.1
MA0079.2
MA0080.2
MA0081.1
MA0083.1
MA0084.1
MA0087.1
MA0088.1
MA0089.1
MA0090.1
MA0091.1
MA0092.1
MA0093.1
MA0095.1
MA0098.1
MA0099.2
MA0100.1
MA0101.1
MA0102.2
MA0103.1
MA0104.2
MA0105.1
MA0106.1
MA0107.1
MA0108.2
MA0109.1
MA0111.1
MA0112.2
MA0113.1
MA0114.1
MA0115.1
MA0116.1
MA0117.1
MA0119.1
MA0122.1
MA0124.1
MA0125.1
MA0130.1
MA0131.1
MA0132.1
MA0133.1
MA0135.1
MA0136.1
MA0137.2
MA0138.2
MA0139.1
MA0140.1
MA0141.1
MA0142.1
MA0143.1
MA0144.1
MA0145.1
MA0146.1
MA0147.1
MA0148.1
MA0149.1
MA0150.1
MA0151.1
MA0152.1
MA0153.1
MA0154.1
MA0155.1
MA0156.1
MA0157.1
MA0158.1
MA0159.1
MA0160.1
MA0161.1
MA0162.1
MA0163.1
MA0164.1
MA0258.1
MA0259.1
MA0442.1
Upload a file containing a list of weight matrice identifiers [
?
]
Adjust parameters [
?
]
Number of clusters to display [
?
] (max 25)
Maximum P-value [
?
]
Ratio (density of clusters) [
?
]
Enter your
E-mail
address
(optional)
: