Bonsai :: Bioinformatics Software Server

The BONSAI research group provides a wide range of bioinformatics software dedicated to biological sequence analysis. Program tools are available for download and/or through user-friendly web interfaces.

dna

DNA

genome comparison, homology search, gene prediction, genome structure

YASS, Magnolia, Procars

hts

High Throughput Sequencing

DNA-seq, RNA-seq, metatranscriptome, metagenome

SortMeRNA, Vidjil, MATAM, DiNAMO, CRAC, SToRM

tfm

Transcription Factor Matrices

transcription factor binding sites, transcriptional regulation

TFM-Explorer, TFM-Scan, TFM-Pvalue, TFM-CUDA

rna

RNA

noncoding RNA, RNA secondary structure, comparison and alignment, miRNA

Carnac, miRkwood, Gardenia, RNAspace, Regliss, CG-seq

proteins

Proteins

alignment, protein coding sequences

PATH, Protea, ReBlosum

nrp

NRP

nonribosomal peptides

Norine, MyNorine, Smiles2Monomers, Kendrick, rBAN, NRPro

CRIStAL cnrs    Université de Lille