PAMPA homology

Use this form to identify peptide markers in COL1A1 and COL1A2 sequences by comparing them to a reference peptide table. More...


Name of the job (optional) :

Target sequences

Upload the FASTA files for your species of interest.

Optionnaly, upload a limit file (doc : https://github.com/touzet/pampa/wiki/Limiting-searches).

Organisms and peptide markers

Use PAMPA's model:
mammals birds
Use personal data:
Upload your peptide table:
Taxonomy:
Use NCBI taxonomy
Use no taxonomy
Upload your own taxonomy

Parameters for in silico digestion

Digestion enzyme
Maximal peptide length
Minimal peptide length
Maximal number of missed cleavage sites