PAMPA classify
pampa
tutorial
retrieve result with an ID
Use this form to perform taxonomic assignment for ZooMS spectra.
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Name of the job
(optional) :
Mass spectra
Input files
(accepted formats: CSV, MGF or mzML. You can also provide a ZIP archive.)
pampa_example_1.zip
Mass error tolerance
optimized for MALDI-TOF spectra (50.0 ppm)
optimized for MALDI-FTICR spectra (5.0 ppm)
custom value in ppm
custom value in Daltons
Basic mode
Advanced mode
Advanced mode allows the user to provide their own peptide markers, sequences and taxonomy.
Organisms and peptide markers
Choose one or several taxonomic groups :
mammals
birds (experimental)
or
select a list of taxa :
Organisms and peptide markers
Upload one or several peptide table(s)
or
upload a set of amino-acid sequences for in silico digestion
Parameters for in silico digestion
Digestion enzyme
arg-c
asp-n
chymotrypsin high specificity
chymotrypsin low specificity
glutamyl endopeptidase
pepsin ph1.3
pepsin ph2.0
proline endopeptidase
trypsin (Default)
trypsin_exception
Maximal peptide length
Minimal peptide length
Maximal number of missed cleavage sites
Post-translational modifications (PTMs)
include deamidations
Taxonomy
use NCBI taxonomy
use no taxonomy
upload your own taxonomy
Peak configuration
Minimum number of peaks
Results
only optimal results
near-optimal results within a suboptimality percentage :
all results within a suboptimality percentage :
Example loaded. Press 'Run' to begin the search.